STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_021136Uncharacterized protein. (132 aa)    
Predicted Functional Partners:
CRG98_040875
Uncharacterized protein.
    
 0.924
CRG98_040876
Sister chromatid cohesion protein.
    
 0.924
CRG98_028891
Sister chromatid cohesion protein.
    
 0.924
CRG98_039486
WAPL domain-containing protein.
     
 0.784
CRG98_039487
WAPL domain-containing protein.
     
 0.784
CRG98_006263
SMC hinge domain-containing protein.
    
 0.763
CRG98_006262
SMC_N domain-containing protein.
    
 0.763
CRG98_006264
SMC_N domain-containing protein.
    
 0.763
CRG98_034502
Rad21_Rec8 domain-containing protein.
     
 0.710
CRG98_039997
Rad21_Rec8 domain-containing protein.
     
 0.705
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.