STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_015925WD_REPEATS_REGION domain-containing protein. (329 aa)    
Predicted Functional Partners:
CRG98_020596
Uncharacterized protein.
   
 0.949
CRG98_020597
YTH domain-containing protein.
   
 0.949
CRG98_042452
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.872
CRG98_020896
USP domain-containing protein; Belongs to the peptidase C19 family.
    
 0.837
CRG98_008021
TAFII55_N domain-containing protein.
    
 0.834
CRG98_045599
Ubiquitinyl hydrolase 1.
    
 0.820
CRG98_041398
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.819
CRG98_001288
HORMA domain-containing protein.
   
 0.799
CRG98_001289
HORMA domain-containing protein.
   
 0.799
CRG98_008232
WD_REPEATS_REGION domain-containing protein.
   
 0.797
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.