STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_014185Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (105 aa)    
Predicted Functional Partners:
CRG98_002862
Ubiquitin-like domain-containing protein.
   
 0.999
CRG98_031665
Ribos_L4_asso_C domain-containing protein.
   
 0.998
CRG98_000204
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
 0.998
CRG98_010684
Ribosomal_L7Ae domain-containing protein.
   
 0.998
CRG98_032222
Ribosomal_L6e_N domain-containing protein.
   
 0.998
CRG98_027678
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
 0.998
CRG98_001164
Ribosomal protein L37; Binds to the 23S rRNA.
   
 0.998
CRG98_047939
Uncharacterized protein.
   
 0.998
CRG98_034842
KOW domain-containing protein.
   
 0.998
CRG98_032974
Uncharacterized protein.
   
 0.998
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.