STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_013618Aspartate aminotransferase. (443 aa)    
Predicted Functional Partners:
CRG98_001602
Uncharacterized protein.
   
 0.928
CRG98_038669
Uncharacterized protein.
   
 0.926
CRG98_016447
Malate dehydrogenase.
   
 0.924
CRG98_023936
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.922
CRG98_012765
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.922
CRG98_038284
Uncharacterized protein.
   
 0.912
CRG98_038285
Uncharacterized protein.
   
 0.912
CRG98_004879
Malate dehydrogenase.
   
 0.898
CRG98_026474
Uncharacterized protein.
   
 0.892
CRG98_015150
MR_MLE domain-containing protein.
   
 0.892
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.