STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_013828PMEI domain-containing protein. (191 aa)    
Predicted Functional Partners:
CRG98_017525
Pectate lyase.
   
 
  0.821
CRG98_048455
Uncharacterized protein.
    
 0.691
CRG98_044736
Pectate lyase.
   
 
  0.676
CRG98_024775
Pectate lyase.
   
 
  0.676
CRG98_021956
Pectate lyase.
   
 
  0.676
CRG98_022833
Uncharacterized protein.
    
 0.612
CRG98_009828
Uncharacterized protein.
    
 0.612
CRG98_042819
Pectate lyase.
   
 
  0.599
CRG98_046007
Pectate lyase.
   
 
  0.599
CRG98_043553
Pectate lyase.
   
 
  0.599
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.