CRG98_010454 protein (Punica granatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRG98_010454

Uncharacterized protein. (405 aa)

Predicted Functional Partners:

CRG98_021959

0.975

CRG98_004251

0.964

CRG98_015766

0.959

CRG98_009835

0.957

CRG98_005179

0.956

CRG98_014271

0.955

CRG98_003825

0.955

CRG98_013312

0.954

CRG98_022243

0.952

CRG98_015519

0.941

Your Current Organism:

Punica granatum

NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRG98_003825	CRG98_004251	A0A2I0L514	A0A2I0L3V1	CBF domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
CRG98_003825	CRG98_005179	A0A2I0L514	A0A218W6W0	CBF domain-containing protein.	NUC153 domain-containing protein.	0.942
CRG98_003825	CRG98_009835	A0A2I0L514	A0A2I0KNQ0	CBF domain-containing protein.	Uncharacterized protein.	0.999
CRG98_003825	CRG98_010454	A0A2I0L514	A0A2I0KKZ8	CBF domain-containing protein.	Uncharacterized protein.	0.955
CRG98_003825	CRG98_013312	A0A2I0L514	A0A2I0KEP6	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
CRG98_003825	CRG98_014271	A0A2I0L514	A0A2I0K9T9	CBF domain-containing protein.	Uncharacterized protein.	0.954
CRG98_003825	CRG98_015519	A0A2I0L514	A0A218WRI3	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
CRG98_003825	CRG98_015766	A0A2I0L514	A0A2I0K5G3	CBF domain-containing protein.	Sas10 domain-containing protein.	0.999
CRG98_003825	CRG98_021959	A0A2I0L514	A0A218WB02	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
CRG98_003825	CRG98_022243	A0A2I0L514	A0A218XLK7	CBF domain-containing protein.	Uncharacterized protein.	0.991
CRG98_004251	CRG98_003825	A0A2I0L3V1	A0A2I0L514	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	CBF domain-containing protein.	0.999
CRG98_004251	CRG98_005179	A0A2I0L3V1	A0A218W6W0	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	NUC153 domain-containing protein.	0.999
CRG98_004251	CRG98_009835	A0A2I0L3V1	A0A2I0KNQ0	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999
CRG98_004251	CRG98_010454	A0A2I0L3V1	A0A2I0KKZ8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.964
CRG98_004251	CRG98_013312	A0A2I0L3V1	A0A2I0KEP6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.994
CRG98_004251	CRG98_014271	A0A2I0L3V1	A0A2I0K9T9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.997
CRG98_004251	CRG98_015519	A0A2I0L3V1	A0A218WRI3	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.999
CRG98_004251	CRG98_015766	A0A2I0L3V1	A0A2I0K5G3	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 domain-containing protein.	0.999
CRG98_004251	CRG98_021959	A0A2I0L3V1	A0A218WB02	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.998
CRG98_004251	CRG98_022243	A0A2I0L3V1	A0A218XLK7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.997