STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_008295Uncharacterized protein. (451 aa)    
Predicted Functional Partners:
CRG98_023936
4-hydroxyphenylpyruvate dioxygenase.
     
 0.892
CRG98_046069
Uncharacterized protein.
     
 0.879
CRG98_041534
Malate synthase; Belongs to the malate synthase family.
     
 0.875
CRG98_013344
CN hydrolase domain-containing protein.
    
 0.870
CRG98_006325
CN hydrolase domain-containing protein.
    
 0.870
CRG98_006324
CN hydrolase domain-containing protein.
    
 0.870
CRG98_010858
Glutamine synthetase.
    
 0.869
CRG98_024502
Formate dehydrogenase, mitochondrial; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.
   
 
  0.855
CRG98_019368
Uncharacterized protein.
     
 0.854
CRG98_038669
Uncharacterized protein.
   
 
 0.854
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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