STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_006906RING-type domain-containing protein. (209 aa)    
Predicted Functional Partners:
CRG98_029235
Uncharacterized protein.
  
     0.510
CRG98_009871
NAC domain-containing protein.
  
     0.509
CRG98_028676
Uncharacterized protein.
  
     0.474
CRG98_020768
Bulb-type lectin domain-containing protein.
  
     0.440
CRG98_029305
Uncharacterized protein.
  
     0.438
CRG98_018628
Uncharacterized protein.
  
     0.424
CRG98_017635
Uncharacterized protein.
  
     0.419
CRG98_007141
BHLH domain-containing protein.
  
     0.419
CRG98_043009
Uncharacterized protein.
  
     0.413
CRG98_010311
Uncharacterized protein.
  
     0.407
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.