STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_006859Lipase_GDSL domain-containing protein; Belongs to the 'GDSL' lipolytic enzyme family. (369 aa)    
Predicted Functional Partners:
CRG98_044894
Uncharacterized protein.
    
  0.577
CRG98_002862
Ubiquitin-like domain-containing protein.
    
  0.561
CRG98_030280
Ubiquitin-like domain-containing protein.
    
  0.554
CRG98_050286
Ubiquitin-like domain-containing protein.
    
  0.554
CRG98_003212
Ubiquitin-like domain-containing protein.
    
  0.554
CRG98_028443
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
    
  0.527
CRG98_013933
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.527
CRG98_015644
Uncharacterized protein.
   
  0.525
CRG98_046813
Uncharacterized protein.
   
   0.512
CRG98_008077
Uncharacterized protein.
   
   0.512
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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