CRG98_004127 protein (Punica granatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRG98_004127

STAS domain-containing protein. (315 aa)

Predicted Functional Partners:

CRG98_013189

0.788

CRG98_008614

0.707

CRG98_031896

0.704

CRG98_027745

0.701

CRG98_032548

0.663

CRG98_011706

0.632

CRG98_010097

0.590

CRG98_010098

0.590

CRG98_010858

0.564

CRG98_024903

0.564

Your Current Organism:

Punica granatum

NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRG98_004127	CRG98_008614	A0A2I0L439	A0A218WVF7	STAS domain-containing protein.	Uncharacterized protein.	0.707
CRG98_004127	CRG98_010097	A0A2I0L439	A0A2I0KLZ6	STAS domain-containing protein.	Uncharacterized protein.	0.590
CRG98_004127	CRG98_010098	A0A2I0L439	A0A2I0KMM0	STAS domain-containing protein.	Uncharacterized protein.	0.590
CRG98_004127	CRG98_010858	A0A2I0L439	A0A218X0J3	STAS domain-containing protein.	Glutamine synthetase.	0.564
CRG98_004127	CRG98_011706	A0A2I0L439	A0A2I0KIG9	STAS domain-containing protein.	Uncharacterized protein.	0.632
CRG98_004127	CRG98_013189	A0A2I0L439	A0A2I0KCY7	STAS domain-containing protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.788
CRG98_004127	CRG98_024903	A0A2I0L439	A0A218X8T0	STAS domain-containing protein.	Uncharacterized protein.	0.564
CRG98_004127	CRG98_027745	A0A2I0L439	A0A2I0J6G7	STAS domain-containing protein.	Uncharacterized protein.	0.701
CRG98_004127	CRG98_031896	A0A2I0L439	A0A2I0IVI9	STAS domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.704
CRG98_004127	CRG98_032548	A0A2I0L439	A0A218WLF1	STAS domain-containing protein.	Uncharacterized protein.	0.663
CRG98_008614	CRG98_004127	A0A218WVF7	A0A2I0L439	Uncharacterized protein.	STAS domain-containing protein.	0.707
CRG98_008614	CRG98_010097	A0A218WVF7	A0A2I0KLZ6	Uncharacterized protein.	Uncharacterized protein.	0.570
CRG98_008614	CRG98_010098	A0A218WVF7	A0A2I0KMM0	Uncharacterized protein.	Uncharacterized protein.	0.707
CRG98_008614	CRG98_011706	A0A218WVF7	A0A2I0KIG9	Uncharacterized protein.	Uncharacterized protein.	0.989
CRG98_008614	CRG98_013189	A0A218WVF7	A0A2I0KCY7	Uncharacterized protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.876
CRG98_008614	CRG98_024903	A0A218WVF7	A0A218X8T0	Uncharacterized protein.	Uncharacterized protein.	0.992
CRG98_008614	CRG98_027745	A0A218WVF7	A0A2I0J6G7	Uncharacterized protein.	Uncharacterized protein.	0.462
CRG98_008614	CRG98_032548	A0A218WVF7	A0A218WLF1	Uncharacterized protein.	Uncharacterized protein.	0.979
CRG98_010097	CRG98_004127	A0A2I0KLZ6	A0A2I0L439	Uncharacterized protein.	STAS domain-containing protein.	0.590
CRG98_010097	CRG98_008614	A0A2I0KLZ6	A0A218WVF7	Uncharacterized protein.	Uncharacterized protein.	0.570