STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_004142Methyltransf_11 domain-containing protein. (141 aa)    
Predicted Functional Partners:
CRG98_005773
Uncharacterized protein.
   
 0.836
CRG98_024425
Uncharacterized protein.
   
  0.747
CRG98_024358
PIN_6 domain-containing protein.
   
 0.698
CRG98_044833
Uncharacterized protein.
   
 0.697
CRG98_034020
Uncharacterized protein.
   
 0.691
CRG98_007093
Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.
    
 0.655
CRG98_044995
Uncharacterized protein.
   
  0.651
CRG98_011756
Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.651
CRG98_003545
Uncharacterized protein.
    
 0.635
CRG98_000633
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.633
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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