STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_001039Cupin type-1 domain-containing protein. (600 aa)    
Predicted Functional Partners:
CRG98_016639
CaM_binding domain-containing protein.
  
 
 0.607
CRG98_040529
Uncharacterized protein.
  
 
  0.589
CRG98_010765
ANK_REP_REGION domain-containing protein.
   
  0.583
CRG98_010766
Uncharacterized protein.
   
  0.583
CRG98_034758
Uncharacterized protein.
   
  0.563
CRG98_050383
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.555
CRG98_050384
Chromo domain-containing protein.
    
 0.555
CRG98_038377
Chromo domain-containing protein.
    
  0.553
CRG98_038378
MRG domain-containing protein.
    
  0.553
CRG98_000232
MRG domain-containing protein.
    
  0.553
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.