STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_000219WD_REPEATS_REGION domain-containing protein. (874 aa)    
Predicted Functional Partners:
CRG98_047014
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
  
 0.710
CRG98_047015
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
  
 0.710
CRG98_025062
Uncharacterized protein.
  
 0.710
CRG98_016511
Endo/exonuclease/phosphatase domain-containing protein.
  
 0.710
CRG98_016512
zf-GRF domain-containing protein.
  
 0.710
CRG98_012966
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
  
 0.710
CRG98_005697
SnoaL-like domain-containing protein.
   
 
  0.648
CRG98_019139
Uncharacterized protein.
   
 
  0.648
CRG98_019140
Uncharacterized protein.
   
 
  0.648
CRG98_028437
Uncharacterized protein.
  
 
 0.645
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.