SBP protein (Punica granatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SBP

Selenium-binding protein. (479 aa)

Predicted Functional Partners:

CRG98_019121

0.878

CRG98_018444

0.875

CRG98_002124

0.874

CRG98_014032

0.873

CRG98_028350

0.865

CRG98_023567

0.865

CRG98_047036

0.862

CRG98_046751

0.862

CRG98_011528

0.830

CRG98_034703

0.830

Your Current Organism:

Punica granatum

NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRG98_002124	CRG98_011528	A0A2I0LA01	A0A218VSK8	PALP domain-containing protein.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.851
CRG98_002124	CRG98_014032	A0A2I0LA01	A0A2I0KAH2	PALP domain-containing protein.	Sulfurtransferase.	0.921
CRG98_002124	CRG98_018444	A0A2I0LA01	A0A218XHL8	PALP domain-containing protein.	Adenosylhomocysteinase.	0.942
CRG98_002124	CRG98_019121	A0A2I0LA01	A0A218WTD8	PALP domain-containing protein.	Hcy-binding domain-containing protein.	0.897
CRG98_002124	CRG98_023567	A0A2I0LA01	A0A2I0JID4	PALP domain-containing protein.	Hcy-binding domain-containing protein.	0.886
CRG98_002124	CRG98_028350	A0A2I0LA01	A0A2I0J4V2	PALP domain-containing protein.	Hcy-binding domain-containing protein.	0.886
CRG98_002124	CRG98_034703	A0A2I0LA01	A0A218XBD2	PALP domain-containing protein.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.852
CRG98_002124	CRG98_046751	A0A2I0LA01	A0A2I0HMF1	PALP domain-containing protein.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.811
CRG98_002124	CRG98_047036	A0A2I0LA01	A0A2I0HLW7	PALP domain-containing protein.	PALP domain-containing protein.	0.847
CRG98_002124	SBP	A0A2I0LA01	K4JX08	PALP domain-containing protein.	Selenium-binding protein.	0.874
CRG98_011528	CRG98_002124	A0A218VSK8	A0A2I0LA01	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	PALP domain-containing protein.	0.851
CRG98_011528	CRG98_014032	A0A218VSK8	A0A2I0KAH2	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Sulfurtransferase.	0.894
CRG98_011528	CRG98_018444	A0A218VSK8	A0A218XHL8	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Adenosylhomocysteinase.	0.903
CRG98_011528	CRG98_019121	A0A218VSK8	A0A218WTD8	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Hcy-binding domain-containing protein.	0.860
CRG98_011528	CRG98_023567	A0A218VSK8	A0A2I0JID4	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Hcy-binding domain-containing protein.	0.821
CRG98_011528	CRG98_028350	A0A218VSK8	A0A2I0J4V2	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Hcy-binding domain-containing protein.	0.821
CRG98_011528	SBP	A0A218VSK8	K4JX08	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Selenium-binding protein.	0.830
CRG98_014032	CRG98_002124	A0A2I0KAH2	A0A2I0LA01	Sulfurtransferase.	PALP domain-containing protein.	0.921
CRG98_014032	CRG98_011528	A0A2I0KAH2	A0A218VSK8	Sulfurtransferase.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.894
CRG98_014032	CRG98_018444	A0A2I0KAH2	A0A218XHL8	Sulfurtransferase.	Adenosylhomocysteinase.	0.877