Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BC_0035 | BC_0038 | BC_0035 | BC_0038 | Arginine decarboxylase. | Tpl protein. | 0.737 |
BC_0035 | BC_0039 | BC_0035 | BC_0039 | Arginine decarboxylase. | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | 0.712 |
BC_0035 | BC_0040 | BC_0035 | BC_0040 | Arginine decarboxylase. | Methyltransferase. | 0.653 |
BC_0035 | holB | BC_0035 | BC_0037 | Arginine decarboxylase. | DNA polymerase III, delta' subunit. | 0.778 |
BC_0035 | tmk | BC_0035 | BC_0036 | Arginine decarboxylase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.893 |
BC_0038 | BC_0035 | BC_0038 | BC_0035 | Tpl protein. | Arginine decarboxylase. | 0.737 |
BC_0038 | BC_0039 | BC_0038 | BC_0039 | Tpl protein. | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | 0.854 |
BC_0038 | BC_0040 | BC_0038 | BC_0040 | Tpl protein. | Methyltransferase. | 0.701 |
BC_0038 | holB | BC_0038 | BC_0037 | Tpl protein. | DNA polymerase III, delta' subunit. | 0.885 |
BC_0038 | tmk | BC_0038 | BC_0036 | Tpl protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.719 |
BC_0039 | BC_0035 | BC_0039 | BC_0035 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Arginine decarboxylase. | 0.712 |
BC_0039 | BC_0038 | BC_0039 | BC_0038 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Tpl protein. | 0.854 |
BC_0039 | BC_0040 | BC_0039 | BC_0040 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Methyltransferase. | 0.662 |
BC_0039 | BC_0265 | BC_0039 | BC_0265 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Hypothetical Cytosolic Protein. | 0.655 |
BC_0039 | BC_0864 | BC_0039 | BC_0864 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Protein ecsB. | 0.622 |
BC_0039 | BC_1547 | BC_0039 | BC_1547 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | DNA replication protein dnaD. | 0.597 |
BC_0039 | dnaA | BC_0039 | BC_0001 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Chromosomal replication initiator protein dnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.637 |
BC_0039 | dnaN | BC_0039 | BC_0002 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.682 |
BC_0039 | holB | BC_0039 | BC_0037 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | DNA polymerase III, delta' subunit. | 0.868 |
BC_0039 | tmk | BC_0039 | BC_0036 | Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.801 |
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