STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sasP-1Small acid-soluble spore protein; SASP are bound to spore DNA. They are double-stranded DNA- binding proteins that cause DNA to change to an a-like conformation. They protect the DNA backbone from chemical and enzymatic cleavage and are thus involved in dormant spore's high resistance to UV light (By similarity). (70 aa)    
Predicted Functional Partners:
gerQ
Hypothetical protein.
  
    0.746
cotE
Spore coat protein E.
  
  
 0.744
BC_2536
Cell wall hydrolase cwlJ.
  
    0.713
BC_5390
Cell wall hydrolase cwlJ.
  
    0.692
yabP
Hypothetical protein.
  
     0.690
BC_0263
Hypothetical protein.
  
    0.681
BC_4064
Stage V sporulation protein AF.
  
     0.677
BC_4974
Cell wall endopeptidase, family M23/M37.
  
     0.667
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.647
BC_0169
Spore germination protein GerD.
  
    0.601
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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