STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_3688Hypothetical Cytosolic Protein. (79 aa)    
Predicted Functional Partners:
BC_3689
Site-specific recombinase.
  
  
 0.774
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.630
BC_3961
Putative transcriptional regulator; Belongs to the UPF0223 family.
  
     0.599
BC_3897
RNA binding protein.
 
     0.484
BC_1526
Hypothetical Membrane Spanning Protein.
  
    0.482
recX
Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family.
  
    0.452
BC_3680
Hypothetical Exported Protein.
 
    0.419
BC_0880
Putative transcriptional regulator; Belongs to the UPF0342 family.
  
    0.413
holA
DNA polymerase III, delta subunit.
  
    0.411
BC_4554
Colicin V production protein.
  
    0.404
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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