Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BC_0589 | BC_1031 | BC_0589 | BC_1031 | Formate dehydrogenase alpha chain. | Oxalate decarboxylase. | 0.900 |
BC_0589 | BC_2136 | BC_0589 | BC_2136 | Formate dehydrogenase alpha chain. | Nitrite reductase [NAD(P)H] large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.631 |
BC_0589 | BC_3573 | BC_0589 | BC_3573 | Formate dehydrogenase alpha chain. | Formate dehydrogenase alpha chain. | 0.901 |
BC_0589 | amiF | BC_0589 | BC_3939 | Formate dehydrogenase alpha chain. | Amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family. | 0.903 |
BC_0589 | kynB | BC_0589 | BC_2758 | Formate dehydrogenase alpha chain. | Metal-dependent hydrolase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. | 0.901 |
BC_0589 | mdh | BC_0589 | BC_4592 | Formate dehydrogenase alpha chain. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.822 |
BC_1031 | BC_0589 | BC_1031 | BC_0589 | Oxalate decarboxylase. | Formate dehydrogenase alpha chain. | 0.900 |
BC_1031 | BC_3573 | BC_1031 | BC_3573 | Oxalate decarboxylase. | Formate dehydrogenase alpha chain. | 0.900 |
BC_1031 | amiF | BC_1031 | BC_3939 | Oxalate decarboxylase. | Amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family. | 0.900 |
BC_1031 | kynB | BC_1031 | BC_2758 | Oxalate decarboxylase. | Metal-dependent hydrolase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. | 0.900 |
BC_1031 | mdh | BC_1031 | BC_4592 | Oxalate decarboxylase. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.801 |
BC_1424 | BC_1491 | BC_1424 | BC_1491 | Ferredoxin--nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.920 |
BC_1424 | BC_2136 | BC_1424 | BC_2136 | Ferredoxin--nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrite reductase [NAD(P)H] large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.941 |
BC_1424 | amiF | BC_1424 | BC_3939 | Ferredoxin--nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family. | 0.915 |
BC_1424 | hcp | BC_1424 | BC_3439 | Ferredoxin--nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.900 |
BC_1424 | nirD | BC_1424 | BC_2135 | Ferredoxin--nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrite reductase [NAD(P)H] small subunit. | 0.921 |
BC_1491 | BC_1424 | BC_1491 | BC_1424 | NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Ferredoxin--nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.920 |
BC_1491 | BC_2136 | BC_1491 | BC_2136 | NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrite reductase [NAD(P)H] large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.918 |
BC_1491 | amiF | BC_1491 | BC_3939 | NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family. | 0.934 |
BC_1491 | hcp | BC_1491 | BC_3439 | NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.915 |
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