STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabT4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (479 aa)    
Predicted Functional Partners:
BC_0357
Succinate-semialdehyde dehydrogenase (NADP+).
 0.971
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.958
iolA
Methylmalonate-semialdehyde dehydrogenase (acylating); Catalyzes the oxidation of malonate semialdehyde (MSA) and methylmalonate semialdehyde (MMSA) into acetyl-CoA and propanoyl-CoA, respectively.
 0.943
BC_2832
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.937
BC_1285
Aldehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family.
  
 0.936
BC_2241
Succinate-semialdehyde dehydrogenase (NADP+).
 
 0.936
BC_3555
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.936
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.909
BC_2289
3-hydroxyisobutyrate dehydrogenase.
   
 
  0.900
BC_4042
3-hydroxyisobutyrate dehydrogenase.
     
  0.900
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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