Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BC_1908Phage-related protein. (1658 aa)    
Predicted Functional Partners:
BC_0429
Endochitinase.
 
 
 
 0.802
BC_4175
Putative cell adhesion protein (contact hemolysin TlyA-related).
  
  
 0.769
BC_2196
Hemolysin III.
  
  
 0.636
BC_5449
Conserved membrane protein (hemolysin III-like protein).
  
  
 0.635
BC_1911
N-acetylmuramoyl-L-alanine amidase.
       0.539
BC_1909
XpaF1 protein.
       0.536
BC_1910
Holin.
       0.536
BC_1906
Phage protein.
 
     0.502
BC_5084
Lanthionine biosynthesis protein.
  
     0.467
BC_4662
Acetoin utilization acuC protein.
   
 0.452
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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