STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_1945Galactoside O-acetyltransferase. (188 aa)    
Predicted Functional Partners:
BC_1944
Lipopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.892
BC_1943
Glycosyltransferase.
 
  
 0.834
hemL1
Glutamate-1-semialdehyde 2,1-aminomutase.
     
 0.603
hemL2
Glutamate-1-semialdehyde 2,1-aminomutase.
     
 0.603
thiF
Molybdopterin biosynthesis MoeB protein.
  
  
 0.597
BC_5479
Mechanosensitive ion channel.
  
  
 0.597
BC_2215
Mechanosensitive ion channel.
     
 0.595
thiE
Thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
      
 0.593
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
      
 0.524
BC_3081
Hypothetical protein.
  
    0.518
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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