Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BC_1978Siderophore biosynthesis protein. (602 aa)    
Predicted Functional Partners:
BC_1979
Siderophore biosynthesis protein.
 
0.988
BC_1982
Hypothetical protein.
  
 
 0.977
BC_1983
Hypothetical Cytosolic Protein.
 
  
 0.888
asbD
Acyl carrier protein.
  
  
 0.841
BC_1980
AMP-(fatty)acid ligases.
 
   
 0.809
BC_1331
Internalin.
      
 0.766
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.621
BC_4528
Ferrichrome-binding protein.
 
  
 0.589
dhbC
Isochorismate synthase.
   
  
 0.571
BC_0906
Ornithine cyclodeaminase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using preferentially NADPH over NADH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L-proline (t3LHyp) to L-proline, which allows B.cereus to grow on t3LHyp as a sole carbon source. Belongs to the ornithine cyclodeaminase/mu-crystallin family.
  
  
 0.504
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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