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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_1982Hypothetical protein. (331 aa)    
Predicted Functional Partners:
BC_1979
Siderophore biosynthesis protein.
  
 
 0.991
BC_1980
AMP-(fatty)acid ligases.
  
 0.988
asbD
Acyl carrier protein.
  
  
 0.970
BC_1978
Siderophore biosynthesis protein.
  
 
 0.964
BC_1983
Hypothetical Cytosolic Protein.
  
  
 0.902
BC_2456
Peptide synthetase.
  
 
 0.870
fabD
Malonyl-CoA-[acyl-carrier-protein] transacylase.
  
 0.850
BC_5299
NADH-quinone oxidoreductase chain C.
   
 0.843
dltB
Protein dltB; Could be involved in the transport of activated D-alanine through the membrane.
  
 
 0.832
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.818
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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