Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BC_1997Intracellular serine protease; Belongs to the peptidase S8 family. (315 aa)    
Predicted Functional Partners:
BC_3745
Phosphoglycerate mutase.
   
  
 0.708
BC_1348
Hypothetical protein.
      
 0.693
BC_1691
Phosphoglycerate mutase.
      
 0.693
BC_2059
Phosphoglycerate mutase.
      
 0.693
BC_3478
Phosphoglycerate mutase.
      
 0.693
BC_3934
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
      
 0.693
BC_4348
Phosphoglycerate mutase family.
   
  
 0.693
BC_4971
Phosphoglycerate mutase.
      
 0.693
BC_4847
D-alanyl-D-alanine carboxypeptidase.
  
  
 0.671
BC_2171
Proline iminopeptidase.
  
  
 0.626
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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