STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_2013Alpha/beta hydrolase. (314 aa)    
Predicted Functional Partners:
CYP102A5
NADPH-cytochrome P450 reductase; Functions as a fatty acid monooxygenase. Catalyzes hydroxylation of fatty acids at omega-1, omega-2 and omega-3 positions, yielding primarily omega-1 and omega-2 hydroxylated products. Metabolizes unsaturated and saturated fatty acids as well as N- acylamino acids. Has a preference for long-chain unsaturated fatty acids over saturated fatty acids. Shows activity toward saturated fatty acids with a chain length of 9-18 carbons with preference for longer fatty acids. Also displays a NADPH-dependent reductase activity in the C-terminal domain, which allows [...]
  
 
 0.738
BC_4106
Alpha/beta hydrolase.
     
 0.632
BC_1797
SAM-dependent methyltransferases.
  
     0.516
rsgA
GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
      0.466
BC_2012
Hypothetical protein.
  
    0.441
BC_0192
Acylamino-acid-releasing enzyme.
 
   
 0.408
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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