Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BC_2139Hypothetical protein. (78 aa)    
Predicted Functional Partners:
BC_2598
Phage protein.
   
    0.713
BC_0772
Hypothetical protein.
   
    0.595
BC_1591
Hypothetical protein.
   
    0.568
BC_3581
Hypothetical protein.
   
    0.568
BC_1944
Lipopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
   
    0.479
BC_1329
Transcriptional regulator, DeoR family.
   
    0.456
BC_2138
Hypothetical protein.
  
    0.456
BC_2878
Hypothetical protein.
   
    0.452
BC_2410
Transcriptional regulator, TetR family.
   
    0.450
BC_1374
N-acyl-L-amino acid amidohydrolase.
   
    0.446
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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