Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BC_3027 | BC_3058 | Hypothetical protein. | Phosphohydrolase (MutT/nudix family protein). | 0.428 |
BC_3058 | BC_3027 | Phosphohydrolase (MutT/nudix family protein). | Hypothetical protein. | 0.428 |
BC_3058 | BC_3059 | Phosphohydrolase (MutT/nudix family protein). | Putative cephalosporin hydroxylase CmcI. | 0.438 |
BC_3058 | BC_4315 | Phosphohydrolase (MutT/nudix family protein). | Coproporphyrinogen oxidase, anaerobic; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.482 |
BC_3059 | BC_3058 | Putative cephalosporin hydroxylase CmcI. | Phosphohydrolase (MutT/nudix family protein). | 0.438 |
BC_4315 | BC_3058 | Coproporphyrinogen oxidase, anaerobic; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Phosphohydrolase (MutT/nudix family protein). | 0.482 |