STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_3205Succinoglycan biosynthesis protein. (445 aa)    
Predicted Functional Partners:
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.777
pfkB
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.649
abc-f
Pristinamycin resistance protein VgaB.
      
 0.597
BC_0773
Fructokinase.
      
 0.595
BC_4106
Alpha/beta hydrolase.
   
    0.587
BC_3348
Hypothetical protein.
  
     0.574
BC_0655
Universal stress protein family.
   
  
 0.552
BC_3169
D-alanyl-D-alanine carboxypeptidase.
  
    0.535
BC_3725
Exochitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.534
BC_2710
NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
     0.531
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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