STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_3252Hypothetical protein. (83 aa)    
Predicted Functional Partners:
BC_3253
Transcriptional regulator, AraC family.
 
 
 0.588
BC_3251
Hypothetical protein.
  
  
 0.562
BC_4264
Phosphoglucomutase.
  
  
 0.507
BC_1586
Undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.420
BC_5270
Undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.420
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.406
BC_1708
Hypothetical protein.
  
  
 0.404
BC_1212
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.402
BC_3750
UDP-N-acetylglucosamine 4,6-dehydratase.
  
  
 0.400
BC_5274
UDP-N-acetylglucosamine 4,6-dehydratase.
  
  
 0.400
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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