STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_3689Site-specific recombinase. (218 aa)    
Predicted Functional Partners:
BC_3688
Hypothetical Cytosolic Protein.
  
  
 0.774
BC_5006
Prolyne dehydrogenase.
      
 0.767
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.747
BC_3151
Zwittermicin A resistance protein zmaR.
  
  
 0.743
BC_3995
Hypothetical Cytosolic Protein.
  
     0.731
BC_4620
Zwittermicin A resistance protein zmaR.
  
  
 0.719
BC_1600
Ribonuclease H.
 
  
 0.706
BC_2877
Zwittermicin A resistance protein ZmaR.
   
  
 0.667
BC_4202
Hypothetical Membrane Spanning Protein.
  
     0.666
BC_1868
Phage protein.
  
     0.664
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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