STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC_3771IG hypothetical 16757; Belongs to the UPF0342 family. (143 aa)    
Predicted Functional Partners:
BC_3933
Hypothetical protein; Belongs to the UPF0342 family.
  
 
 
 0.952
miaB
tRNA 2-methylthioadenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.819
BC_5376
Hypothetical Cytosolic Protein.
  
    0.798
BC_4690
Hypothetical Cytosolic Protein; Belongs to the UPF0354 family.
  
    0.763
BC_3949
Hypothetical protein; Belongs to the UPF0358 family.
  
     0.745
BC_0880
Putative transcriptional regulator; Belongs to the UPF0342 family.
  
 
 0.734
BC_1475
ResB protein.
  
     0.730
BC_3660
Hypothetical protein.
  
     0.728
codY
Transcription pleiotropic repressor codY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
  
   
 0.725
BC_3938
Hypothetical Cytosolic Protein.
  
    0.725
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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