Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
BC_4792Cytochrome d ubiquinol oxidase subunit I. (449 aa)    
Predicted Functional Partners:
cydB-2
Cytochrome d ubiquinol oxidase subunit II.
 0.999
cydB
Cytochrome d ubiquinol oxidase subunit II.
 0.998
BC_5225
Cytochrome d ubiquinol oxidase subunit II.
  
 0.989
BC_3979
Cytochrome d ubiquinol oxidase subunit II.
  
 0.988
BC_1938
Cytochrome d ubiquinol oxidase subunit I.
  
 
 
0.947
cydD
Transport ATP-binding protein cydD.
 
  
 0.927
BC_5224
Cytochrome d ubiquinol oxidase subunit I.
  
  
 
0.924
cydC
Transport ATP-binding protein cydC.
 
  
 0.889
pflA
Pyruvate formate-lyase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
   
    0.747
BC_2136
Nitrite reductase [NAD(P)H] large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
  
 0.706
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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