BC_4955 protein (Bacillus cereus ATCC 14579)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BC_4955

Low temperature requirement C protein. (163 aa)

Predicted Functional Partners:

pgsA

0.721

BC_4954

0.602

ribBA

0.488

BC_3605

0.468

cinA

0.409

psd

0.400

Your Current Organism:

Bacillus cereus ATCC 14579

NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BC_3605	BC_4955	BC_3605	BC_4955	Hypothetical Cytosolic Protein; Belongs to the HesB/IscA family.	Low temperature requirement C protein.	0.468
BC_4954	BC_4955	BC_4954	BC_4955	CotS-related protein.	Low temperature requirement C protein.	0.602
BC_4955	BC_3605	BC_4955	BC_3605	Low temperature requirement C protein.	Hypothetical Cytosolic Protein; Belongs to the HesB/IscA family.	0.468
BC_4955	BC_4954	BC_4955	BC_4954	Low temperature requirement C protein.	CotS-related protein.	0.602
BC_4955	cinA	BC_4955	BC_3780	Low temperature requirement C protein.	Competence-damage protein cinA; Belongs to the CinA family.	0.409
BC_4955	pgsA	BC_4955	BC_3781	Low temperature requirement C protein.	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.721
BC_4955	psd	BC_4955	BC_4335	Low temperature requirement C protein.	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	0.400
BC_4955	ribBA	BC_4955	BC_4111	Low temperature requirement C protein.	GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.	0.488
cinA	BC_4955	BC_3780	BC_4955	Competence-damage protein cinA; Belongs to the CinA family.	Low temperature requirement C protein.	0.409
cinA	pgsA	BC_3780	BC_3781	Competence-damage protein cinA; Belongs to the CinA family.	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.966
pgsA	BC_4955	BC_3781	BC_4955	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Low temperature requirement C protein.	0.721
pgsA	cinA	BC_3781	BC_3780	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Competence-damage protein cinA; Belongs to the CinA family.	0.966
pgsA	psd	BC_3781	BC_4335	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	0.627
psd	BC_4955	BC_4335	BC_4955	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	Low temperature requirement C protein.	0.400
psd	pgsA	BC_4335	BC_3781	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.627
ribBA	BC_4955	BC_4111	BC_4955	GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.	Low temperature requirement C protein.	0.488