Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BC_5000Transcriptional regulator, TetR family. (183 aa)    
Predicted Functional Partners:
BC_5001
Metal-dependent hydrolase.
 
    0.976
BC_3163
Transcriptional regulator, TetR family.
  
     0.567
BC_1814
Transcriptional regulator, TetR family.
  
     0.509
rex
AT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
   
  
 0.493
BC_5002
Acyl-CoA dehydrogenase.
       0.490
BC_0672
Hypothetical protein.
  
     0.437
BC_2179
Acetyltransferase.
      
 0.402
Your Current Organism:
Bacillus cereus ATCC 14579
NCBI taxonomy Id: 226900
Other names: B. cereus ATCC 14579, Bacillus cereus (strain ATCC 14579 / DSM 31)
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