Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BC_0881 | BC_1733 | Sensor protein comP. | Sensory Transduction Protein Kinase. | 0.703 |
BC_0881 | BC_4501 | Sensor protein comP. | Germination protein gerE. | 0.643 |
BC_0881 | BC_5352 | Sensor protein comP. | Two-component response regulator yocG. | 0.830 |
BC_0881 | BC_5353 | Sensor protein comP. | Two-component sensor kinase yocF. | 0.752 |
BC_1008 | BC_2216 | Two component system histidine kinase. | Two-component sensor protein yhcY. | 0.592 |
BC_1008 | BC_5352 | Two component system histidine kinase. | Two-component response regulator yocG. | 0.678 |
BC_1008 | BC_5412 | Two component system histidine kinase. | Two-component sensor protein yhcY. | 0.592 |
BC_1438 | BC_1733 | Two-component sensor protein yvqE. | Sensory Transduction Protein Kinase. | 0.742 |
BC_1438 | BC_4501 | Two-component sensor protein yvqE. | Germination protein gerE. | 0.748 |
BC_1438 | BC_5352 | Two-component sensor protein yvqE. | Two-component response regulator yocG. | 0.844 |
BC_1733 | BC_0881 | Sensory Transduction Protein Kinase. | Sensor protein comP. | 0.703 |
BC_1733 | BC_1438 | Sensory Transduction Protein Kinase. | Two-component sensor protein yvqE. | 0.742 |
BC_1733 | BC_4501 | Sensory Transduction Protein Kinase. | Germination protein gerE. | 0.510 |
BC_1733 | BC_5352 | Sensory Transduction Protein Kinase. | Two-component response regulator yocG. | 0.947 |
BC_2216 | BC_1008 | Two-component sensor protein yhcY. | Two component system histidine kinase. | 0.592 |
BC_2216 | BC_4501 | Two-component sensor protein yhcY. | Germination protein gerE. | 0.670 |
BC_2216 | BC_5352 | Two-component sensor protein yhcY. | Two-component response regulator yocG. | 0.912 |
BC_4501 | BC_0881 | Germination protein gerE. | Sensor protein comP. | 0.643 |
BC_4501 | BC_1438 | Germination protein gerE. | Two-component sensor protein yvqE. | 0.748 |
BC_4501 | BC_1733 | Germination protein gerE. | Sensory Transduction Protein Kinase. | 0.510 |
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