STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIH84200.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
KIH81039.1
Glycine cleavage system transcriptional activator; Idu(4);Orphan_regulatory_proteins; Belongs to the LysR transcriptional regulatory family.
  
     0.598
KIH84140.1
LysR family transcriptional regulator; Isu;DNA-binding_regulatory_proteins,_strays; Belongs to the LysR transcriptional regulatory family.
  
     0.553
KIH83143.1
LysR family transcriptional regulator YnfL; Idu(2);LysR-family_proteins_in_Escherichia_coli idu(2);LysR- family_proteins_in_Salmonella_enterica_Typhimur ium; Belongs to the LysR transcriptional regulatory family.
  
     0.527
KIH84199.1
Idu(5);Glutathione:_Non-redox_reactions.
       0.518
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.503
KIH84851.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.496
KIH84937.1
Putative LysR-family transcriptional regulator.
  
     0.496
KIH82079.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.496
KIH84328.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.482
KIH86066.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.480
Your Current Organism:
Pseudomonas batumici
NCBI taxonomy Id: 226910
Other names: P. batumici, strain UCM B-321
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.