STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIH81462.1Type IV fimbrial biogenesis protein FimT; Isu;Type_IV_pilus. (181 aa)    
Predicted Functional Partners:
KIH81460.1
Type IV fimbrial biogenesis protein PilW; Icw(6);Type_IV_pilus.
 
  
 0.928
KIH81461.1
Type IV fimbrial biogenesis protein PilV; Icw(4);Type_IV_pilus.
 
  
 0.908
KIH81459.1
Type IV fimbrial biogenesis protein PilX; Icw(3);Type_IV_pilus.
 
  
 0.903
KIH83855.1
Type IV fimbrial biogenesis protein PilY1; Isu;Type_IV_pilus.
 
  
 0.901
KIH81458.1
Icw(4);Type_IV_pilus.
 
  
 0.884
KIH85727.1
Icw(5);Type_IV_pilus.
  
  
 0.772
KIH85725.1
Isu;Type_IV_pilus.
 
  
 0.762
KIH85724.1
Icw(2);Type_IV_pilus.
 
   
 0.746
KIH84502.1
Type IV pilus biogenesis protein PilZ.
  
   
 0.729
KIH85726.1
Icw(1);Type_IV_pilus.
 
  
 0.715
Your Current Organism:
Pseudomonas batumici
NCBI taxonomy Id: 226910
Other names: P. batumici, strain UCM B-321
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.