STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE30674.1Uncharacterized membrane protein YkvA, DUF1232 family. (146 aa)    
Predicted Functional Partners:
SDE30636.1
Hypothetical protein.
       0.547
SDE30654.1
Predicted PurR-regulated permease PerM.
       0.545
SDE30588.1
Hypothetical protein.
       0.541
SDE30613.1
Methyltransferase domain-containing protein.
       0.541
SDE70304.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.537
SDE30572.1
Hypothetical protein.
 
     0.465
SDF14335.1
Putative membrane protein.
  
     0.435
SDE79905.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.418
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.