STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE36147.1Tetratricopeptide repeat-containing protein. (539 aa)    
Predicted Functional Partners:
SDE36169.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.975
SDE94558.1
Signal transduction histidine kinase.
   
 0.838
SDE36099.1
Hypothetical protein.
 
     0.796
SDE86975.1
PAS domain S-box-containing protein.
   
 0.699
SDE67937.1
PAS domain S-box-containing protein.
  
 0.629
SDE86302.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
  0.579
SDE45524.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
  0.564
SDE88109.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
  0.559
SDE43542.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
  0.557
SDE36122.1
Hypothetical protein.
       0.554
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.