STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE36348.1Restriction system protein. (307 aa)    
Predicted Functional Partners:
SDE36208.1
Type I restriction enzyme M protein.
 
  
 0.794
SDE36303.1
Type I restriction enzyme, R subunit.
 
  
 0.790
SDE36333.1
Deoxycytidylate deaminase.
       0.773
SDE36233.1
Type I restriction enzyme, S subunit.
 
  
 0.771
SDE55107.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
   
    0.685
SDE36277.1
Fic/DOC family protein.
       0.674
SDE36260.1
Hypothetical protein.
       0.631
SDF23947.1
Type I restriction enzyme M protein.
 
  
 0.568
SDF23926.1
Type I restriction enzyme, R subunit.
 
  
 0.528
SDE36187.1
Hypothetical protein.
       0.465
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.