STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE41054.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (399 aa)    
Predicted Functional Partners:
SDF23648.1
RteC protein.
  
     0.636
SDE43749.1
comF family protein.
   
    0.566
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.558
SDE99431.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.526
SDE40887.1
AAA domain-containing protein.
  
    0.498
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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