STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE45538.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (224 aa)    
Predicted Functional Partners:
SDE45524.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
  0.957
SDE86975.1
PAS domain S-box-containing protein.
   
 0.931
SDE94558.1
Signal transduction histidine kinase.
   
 0.924
SDE31034.1
Signal transduction histidine kinase.
  
  0.875
SDE98538.1
Signal transduction histidine kinase.
 
  0.871
SDE88091.1
Histidine kinase.
  
  0.867
SDF00345.1
Hypothetical protein.
  
  0.867
SDE53252.1
Histidine kinase.
  
  0.865
SDE43562.1
Histidine kinase.
  
  0.845
SDF23572.1
Signal transduction histidine kinase.
  
  0.845
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.