STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE65435.1Glycosyltransferase involved in cell wall bisynthesis. (245 aa)    
Predicted Functional Partners:
SDE65473.1
Glycosyl transferase family 2.
      0.906
SDE65534.1
Heptosyltransferase-2.
    0.753
SDF16416.1
Glycosyltransferase, GT2 family.
 
  
  0.577
SDE65454.1
Methyltransferase domain-containing protein.
       0.559
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
  0.448
SDE65405.1
Polysaccharide deacetylase.
  
 
  0.445
SDE92037.1
Hypothetical protein.
  
 
  0.443
SDE47392.1
ADP-heptose:LPS heptosyltransferase.
 
    0.413
SDE69747.1
Trehalose 6-phosphate synthase/phosphatase.
   
 
 0.402
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.