STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE78743.1dTDP-4-dehydrorhamnose reductase. (288 aa)    
Predicted Functional Partners:
SDF01934.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 0.951
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
       0.774
SDE48059.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.757
SDE70209.1
Hypothetical protein.
  
     0.757
SDE48095.1
dTDP-glucose 4,6-dehydratase.
  
 
 0.748
SDF01579.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.748
SDE73782.1
Hypothetical protein.
  
     0.747
glsA
L-glutaminase; Belongs to the glutaminase family.
       0.745
SDF01907.1
WxcM-like, C-terminal.
  
 
 0.731
SDE72199.1
Hypothetical protein.
  
     0.730
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.