STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE85288.1Protein TonB. (144 aa)    
Predicted Functional Partners:
SDE32261.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
 0.917
SDE53378.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.888
SDE53406.1
Biopolymer transport protein ExbD.
 
 
 0.871
SDF17154.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.866
SDE44471.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.857
SDE85008.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.849
SDF17130.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.848
SDE33502.1
Biopolymer transport protein ExbD.
 
 
 0.842
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
    
  0.805
SDE53335.1
Biopolymer transport protein ExbB.
  
 
 0.771
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.