STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE88746.1Acyl-CoA-binding protein. (88 aa)    
Predicted Functional Partners:
SDE39057.1
PDZ domain-containing protein.
    
  0.927
SDE88799.1
Uncharacterised ACR, YkgG family COG1556.
 
     0.883
SDE88765.1
Phosphatidylserine decarboxylase.
       0.818
SDE88784.1
Phosphatidate cytidylyltransferase.
       0.810
SDE99883.1
ATPase family associated with various cellular activities (AAA).
     
 0.771
SDF17042.1
Hypothetical protein.
  
     0.766
SDE47471.1
Hypothetical protein.
  
     0.763
SDE69288.1
LETM1-like protein.
  
     0.759
SDE90543.1
Hypothetical protein.
  
     0.750
SDE64248.1
Hypothetical protein.
  
     0.745
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.