STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF00072.1Baseplate J-like protein. (1046 aa)    
Predicted Functional Partners:
SDF00126.1
Rhs element Vgr protein.
 
 
   0.999
SDF00056.1
Hypothetical protein.
 
 
 
 0.991
SDF00092.1
Hypothetical protein.
 
 
 0.991
SDF00194.1
Conserved hypothetical phage tail region protein.
 
 
 
 0.988
SDF00212.1
Conserved hypothetical phage tail region protein.
 
 
 
 0.988
SDF00152.1
Hypothetical protein.
 
 
 0.987
SDF00226.1
Hypothetical protein.
 
 
 0.986
SDF00036.1
Hypothetical protein.
 
 
   0.961
SDF00114.1
Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion.
 
     0.943
SDF00259.1
Hypothetical protein.
  
 
 0.933
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.