SDF07034.1 protein (Ulvibacter litoralis) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Score

SDF07034.1

Hypothetical protein. (330 aa)

Predicted Functional Partners:

SDF07058.1

0.864

SDE52300.1

0.831

SDF07078.1

0.738

SDE48046.1

0.636

SDF07014.1

0.588

SDE48059.1

0.566

SDE64655.1

0.541

SDE41982.1

0.528

SDE48274.1

0.440

SDE88437.1

0.411

Your Current Organism:

Ulvibacter litoralis

NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDE41982.1	SDF07034.1	SAMN05421855_101528	SAMN05421855_10570	Dolichol-phosphate mannosyltransferase.	Hypothetical protein.	0.528
SDE48046.1	SDE48059.1	SAMN05421855_101833	SAMN05421855_101834	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.999
SDE48046.1	SDF07034.1	SAMN05421855_101833	SAMN05421855_10570	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	Hypothetical protein.	0.636
SDE48059.1	SDE48046.1	SAMN05421855_101834	SAMN05421855_101833	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.999
SDE48059.1	SDF07014.1	SAMN05421855_101834	SAMN05421855_10569	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Chemotaxis protein MotB.	0.477
SDE48059.1	SDF07034.1	SAMN05421855_101834	SAMN05421855_10570	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Hypothetical protein.	0.566
SDE48274.1	SDF07034.1	SAMN05421855_101844	SAMN05421855_10570	DNA polymerase-3 subunit delta'.	Hypothetical protein.	0.440
SDE48274.1	SDF07078.1	SAMN05421855_101844	SAMN05421855_10572	DNA polymerase-3 subunit delta'.	DNA polymerase III, delta subunit.	0.978
SDE52300.1	SDF07034.1	SAMN05421855_1011047	SAMN05421855_10570	Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.	Hypothetical protein.	0.831
SDE64655.1	SDE88437.1	SAMN05421855_10241	SAMN05421855_103185	RNA polymerase Rpb6.	Hypothetical protein.	0.699
SDE64655.1	SDF07034.1	SAMN05421855_10241	SAMN05421855_10570	RNA polymerase Rpb6.	Hypothetical protein.	0.541
SDE64655.1	SDF07058.1	SAMN05421855_10241	SAMN05421855_10571	RNA polymerase Rpb6.	Type I restriction enzyme R protein N terminus (HSDR_N).	0.774
SDE64655.1	SDF07078.1	SAMN05421855_10241	SAMN05421855_10572	RNA polymerase Rpb6.	DNA polymerase III, delta subunit.	0.582
SDE88437.1	SDE64655.1	SAMN05421855_103185	SAMN05421855_10241	Hypothetical protein.	RNA polymerase Rpb6.	0.699
SDE88437.1	SDF07034.1	SAMN05421855_103185	SAMN05421855_10570	Hypothetical protein.	Hypothetical protein.	0.411
SDE88437.1	SDF07058.1	SAMN05421855_103185	SAMN05421855_10571	Hypothetical protein.	Type I restriction enzyme R protein N terminus (HSDR_N).	0.461
SDF07014.1	SDE48059.1	SAMN05421855_10569	SAMN05421855_101834	Chemotaxis protein MotB.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.477
SDF07014.1	SDF07034.1	SAMN05421855_10569	SAMN05421855_10570	Chemotaxis protein MotB.	Hypothetical protein.	0.588
SDF07014.1	SDF07058.1	SAMN05421855_10569	SAMN05421855_10571	Chemotaxis protein MotB.	Type I restriction enzyme R protein N terminus (HSDR_N).	0.536
SDF07014.1	SDF07078.1	SAMN05421855_10569	SAMN05421855_10572	Chemotaxis protein MotB.	DNA polymerase III, delta subunit.	0.459

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Network Stats

number of nodes:

11

number of edges:

54

average node degree:

9.82

avg. local clustering coefficient:

0.982

expected number of edges:

39

PPI enrichment p-value:

0.00605

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0015846

Polyamine transport

3 of 22

1.77

1.11

0.0058

GO:0006810

Transport

11 of 732

0.82

0.83

1.62e-06

GO:0055085

Transmembrane transport

9 of 569

0.84

0.78

7.85e-05

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0015417

ABC-type polyamine transporter activity

8 of 22

2.2

5.7

1.11e-13

GO:0019808

Polyamine binding

2 of 10

1.94

0.84

0.0253

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005886

Plasma membrane

9 of 790

0.7

0.58

0.00055

GO:0016021

Integral component of membrane

9 of 1019

0.59

0.46

0.0016

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7446

Polyamine transport, and ABC-type polyamine transporter activity

10 of 44

2.0

5.86

8.15e-17

CL:7444

Polyamine transport, and MetI-like superfamily

11 of 61

1.9

5.62

4.33e-18

CL:7519

Mixed, incl. Spermidine/putrescine ABC transporter, ATP-binding subunit, and Polyamine catabolic process

4 of 5

2.54

3.4

3.49e-07

CL:7447

Polyamine transport, and ABC-type polyamine transporter activity

6 of 36

1.86

3.13

3.09e-08

CL:7449

Polyamine transport, and ABC-type polyamine transporter activity

5 of 24

1.96

2.9

4.03e-07

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005887

Integral component of plasma membrane

7 of 83

1.57

2.45

6.44e-08

GOCC:0016021

Integral component of membrane

8 of 210

1.22

1.6

2.51e-07

GOCC:0005886

Plasma membrane

9 of 651

0.78

0.72

4.55e-05

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0813

Transport

10 of 304

1.16

1.61

2.95e-09

KW-1003

Cell membrane

9 of 309

1.1

1.39

1.22e-07

KW-0574

Periplasm

2 of 13

1.83

0.89

0.0189

KW-1133

Transmembrane helix

8 of 915

0.58

0.41

0.0098

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00528

Binding-protein-dependent transport system inner membrane component

7 of 83

1.57

2.37

1.44e-07

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR035906

MetI-like superfamily

8 of 84

1.62

2.82

3.80e-09

IPR000515

ABC transporter type 1, transmembrane domain MetI-like

8 of 84

1.62

2.82

3.80e-09

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