STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF16291.1HPt (histidine-containing phosphotransfer) domain-containing protein. (113 aa)    
Predicted Functional Partners:
SDE94558.1
Signal transduction histidine kinase.
  
 0.961
SDE94515.1
Signal transduction histidine kinase.
  
 0.939
SDE86975.1
PAS domain S-box-containing protein.
  
 0.901
SDF02395.1
PAS domain S-box-containing protein.
  
 0.864
SDE67937.1
PAS domain S-box-containing protein.
  
 0.862
SDE41649.1
Tetratricopeptide repeat-containing protein.
  
 
 0.856
SDE88495.1
Hypothetical protein.
 
 0.848
SDF16268.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
    0.815
SDF16319.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.807
SDE43860.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.803
Your Current Organism:
Ulvibacter litoralis
NCBI taxonomy Id: 227084
Other names: Bacteroidetes bacterium KMM 3912, CCUG 47093, DSM 16195, DSM 19843, KCTC 12104, KMM 3912, U. litoralis, Ulvibacter litoralis Nedashkovskaya et al. 2004
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