STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL44115.1Pilus assembly protein, ATPase of CpaF family. (509 aa)    
Predicted Functional Partners:
SCL44111.1
Flp pilus assembly protein TadB.
 
  
 0.982
SCL44113.1
Flp pilus assembly protein TadB.
 
  
 0.967
SCL44117.1
Cellulose biosynthesis protein BcsQ.
 
  
 0.961
SCL44108.1
TadE-like protein.
 
    0.918
SCL44106.1
TadE-like protein.
 
    0.907
SCL44104.1
Putative Flp pilus-assembly TadE/G-like.
 
     0.906
SCL44118.1
SAF domain-containing protein.
 
    0.906
SCL44102.1
LysM domain-containing protein.
 
     0.845
SCL44376.1
Type II secretion system (T2SS), protein F.
 
  
 0.804
SCL44120.1
Hypothetical protein.
 
     0.753
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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